Claudio V.
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Claudio I. is a distinguished Bioinformatics Scientist with extensive expertise in metagenomics and microbial ecology, specifically rooted in the analysis of genomic datasets to derive meaningful insights. Holding a PhD in Molecular Biotechnology from the University of Chile, he has a rich background in environmental biotechnology and functional genomics. Currently, as a Research Assistant at the BASE Millennium Institute, Claudio conducts in-depth genomics and statistical analyses of Antarctic soil samples, leveraging advanced toolsets such as R, Python, and Bash for reproducible analysis. His previous work as a Doctoral Researcher saw him leading projects on the bioremediation of pollutants in penguin-impacted soils, standardizing workflows with tools like FastP and Kraken2, and recovering MAGs for environmental applications. In mastering bioinformatic methodologies, from 16S metabarcoding to MAG recovery, Claudio applies his Linux administration skills to support large research teams, ensuring robust and efficient data processing environments.
Experience
Research Assistant
BASE Millennium Institute · 2026 — PresentConduct bioinformatic and statistical analyses on genomic and metagenomic data from Antarctic soil samples using R, Python, and Bash. Manage Linux server administration, software installation, user management, and pipeline configuration to assist up to 13 researchers in bioinformatics workflows. Participate in the preparation and submission of two scientific manuscripts to indexed journals.Doctoral Researcher
University of Chile · 2022 — 2026Directed a doctoral research project investigating the bioremediation potential of anthropogenic pollutants in Antarctica across multiple sampled sites. Identified genes and sequences linked to the degradation of naphthalene and plastic-related contaminants such as PET, PS, and PE. Established and automated workflows for quality control, taxonomic classification, assembly, annotation, and binning utilizing tools including FastP, Trimmomatic, Kraken2, SPAdes, MetaBAT2, CheckM, Prokka, and DRAM. Recovered an average of 8 MAGs per sample from various samples and conducted pathway reconstruction for identifying biodegradation pathways.Master's Thesis Researcher
Universidad de los Andes · 2019 — 2022Developed a thesis focusing on the genetic and functional diversity of microbial communities in an environmental biotechnology context related to naphthalene vapor treatment. Optimized biofilter adaptation time from one month to one week through the use of specific microbial strains. Conducted quality control, data analysis, and functional inference of 16S metabarcoding data with DADA2, Phyloseq, and PICRUSt2, combining approaches from microbiology, bioprocess, and data analysis for evaluating biofilter performance.Undergraduate Researcher
University of Chile · 2018 — 2019Explored the functional potential of bacterial symbionts associated with the lichen Peltigera frigida. Employed high-throughput sequencing analysis and functional inference techniques using PICRUSt2 to develop ecological hypotheses. Identified microbiome functions related to nutrient acquisition for nitrogen, phosphorus, and sulfur.Laboratory Intern
University of Chile · 2014 — 2015Gained foundational experience in experimental techniques and laboratory support tasks within molecular biology. Engaged with various methods including PCR, Western blot, Southern blot, and cell culture in an academic lab environment.
Skills & Expertise
Education
- PhD in Molecular BiotechnologyUniversity of Chile · 2021 — 2026
- Master's Degree in Biological SciencesUniversity of Chile · 2019 — 2023
- Molecular Biotechnology EngineeringUniversity of Chile · 2014 — 2020
- Bachelor's Degree in Molecular BiotechnologyUniversity of Chile · 2014 — 2018
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